3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13980

Details:

PFam ID : PF13980

PFam Domain Description : Uncharacterised protein family (UPF0370)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 33

Average sequence length: 59.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13980	D2U230_9ENTR_1_38	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13980	D2U230_9ENTR_1_38	100

Sequence based PCA Plot of the family - PF13980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay