3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13977

Details:

PFam ID : PF13977

PFam Domain Description : Bacterial transcriptional repressor

Number of Sequence in 50% Dataset : 547

Number of Sequence in Full Dataset : 1092

Average sequence length: 128.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13977	E8N5S4_ANATU_82_195	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13977	C0ZKV6_BREBN_64_195	100

Sequence based PCA Plot of the family - PF13977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay