3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13976

Details:

PFam ID : PF13976

PFam Domain Description : GAG-pre-integrase domain

Number of Sequence in 50% Dataset : 214

Number of Sequence in Full Dataset : 933

Average sequence length: 68.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13976	A5B1U5_VITVI_277_320	99.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13976	A5AJX4_VITVI_268_366	99.8

Sequence based PCA Plot of the family - PF13976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay