3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13975

Details:

PFam ID : PF13975

PFam Domain Description : gag-polyprotein putative aspartyl protease

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 332

Average sequence length: 67.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13975	C5LKN6_9ALVE_490_557	25.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13975	C7YSR0_NECH7_54_121	95.4

Sequence based PCA Plot of the family - PF13975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay