3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13974

Details:

PFam ID : PF13974

PFam Domain Description : YebO-like protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 40

Average sequence length: 77.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13974	C4SQM3_YERFR_1_43	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13974	Q7Y3Z6_9CAUD_11_112	97.4

Sequence based PCA Plot of the family - PF13974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=35 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay