3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13973

Details:

PFam ID : PF13973

PFam Domain Description : Domain of unknown function (DUF4222)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 61

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13973	E7T3Z2_SHIBO_1_54	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13973	Q6H9Z8_9CAUD_3_54	100

Sequence based PCA Plot of the family - PF13973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=33 Length=17
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay