3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13970

Details:

PFam ID : PF13970

PFam Domain Description : Domain of unknown function (DUF4221)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 52

Average sequence length: 298.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13970	A3HUB2_9BACT_6_386	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13970	A3HUB2_9BACT_6_386	100

Sequence based PCA Plot of the family - PF13970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=131 Length=8
Motif4 Start=337 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay