3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13968

Details:

PFam ID : PF13968

PFam Domain Description : Domain of unknown function (DUF4220)

Number of Sequence in 50% Dataset : 194

Number of Sequence in Full Dataset : 463

Average sequence length: 230.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13968	Q10RY1_ORYSJ_1_65	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13968	D7TZS4_VITVI_888_987	99.7

Sequence based PCA Plot of the family - PF13968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=232 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay