3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13967

Details:

PFam ID : PF13967

PFam Domain Description : Late exocytosis, associated with Golgi transport

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 535

Average sequence length: 154.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13967	A7YH04_CAEEL_1_201	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13967	YAB9_SCHPO_23_218	100

Sequence based PCA Plot of the family - PF13967 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=74 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay