3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13965

Details:

PFam ID : PF13965

PFam Domain Description : dsRNA-gated channel SID-1

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 105

Average sequence length: 327.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13965	A7YH04_CAEEL_1_201	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13965	D2HMA3_AILME_173_800	100

Sequence based PCA Plot of the family - PF13965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay