3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13964

Details:

PFam ID : PF13964

PFam Domain Description : Kelch motif

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 596

Average sequence length: 51.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13964	Q1S5L7_MEDTR_8_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13964	D7U2W7_VITVI_76_132	100

Sequence based PCA Plot of the family - PF13964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay