3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13963

Details:

PFam ID : PF13963

PFam Domain Description : Transposase-associated domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 247

Average sequence length: 68.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13963	Q1S5L7_MEDTR_8_89	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13963	Q1S5L7_MEDTR_8_89	99.5

Sequence based PCA Plot of the family - PF13963 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=44 Length=8
Motif3 Start=1 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay