3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13962

Details:

PFam ID : PF13962

PFam Domain Description : Domain of unknown function

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 683

Average sequence length: 107.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13962	D0RLQ9_PHYIT_21_47	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13962	B9MV53_POPTR_87_166	99.8

Sequence based PCA Plot of the family - PF13962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay