3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13961

Details:

PFam ID : PF13961

PFam Domain Description : Domain of unknown function (DUF4219)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 246

Average sequence length: 27.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13961	D0RLQ9_PHYIT_21_47	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13961	Q7F9A6_ORYSA_17_42	93.4

Sequence based PCA Plot of the family - PF13961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay