3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13960

Details:

PFam ID : PF13960

PFam Domain Description : Domain of unknown function (DUF4218)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 309

Average sequence length: 96.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13960	A8PE31_COPC7_937_1055	52.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13960	Q2QUY8_ORYSJ_345_472	93.1

Sequence based PCA Plot of the family - PF13960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay