3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13959

Details:

PFam ID : PF13959

PFam Domain Description : Domain of unknown function (DUF4217)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 484

Average sequence length: 63.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13959	D8M576_BLAHO_400_473	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13959	D8M576_BLAHO_400_473	100

Sequence based PCA Plot of the family - PF13959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=37 Length=8
Motif3 Start=51 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay