3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13958

Details:

PFam ID : PF13958

PFam Domain Description : Toxin ToxN, type III toxin-antitoxin system

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 74

Average sequence length: 144.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13958	D2TWM8_9ENTR_2_92	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13958	C2KZ60_9FIRM_27_225	100

Sequence based PCA Plot of the family - PF13958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=46 Length=8
Motif3 Start=119 Length=8
Motif4 Start=186 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay