3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13950

Details:

PFam ID : PF13950

PFam Domain Description : UDP-glucose 4-epimerase C-term subunit

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 1633

Average sequence length: 60.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13950	C6H3A2_AJECH_330_466	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13950	D2MLG4_9BACT_286_346	99.9

Sequence based PCA Plot of the family - PF13950 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=27 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay