3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13949

Details:

PFam ID : PF13949

PFam Domain Description : ALIX V-shaped domain binding to HIV

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 244

Average sequence length: 277.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13949	C6H3A2_AJECH_330_466	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13949	B6K5C1_SCHJY_397_686	100

Sequence based PCA Plot of the family - PF13949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8
Motif4 Start=252 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay