3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13948

Details:

PFam ID : PF13948

PFam Domain Description : Domain of unknown function (DUF4215)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 1036

Average sequence length: 47.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13948	A0CFH7_PARTE_984_1043	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13948	A0DCR1_PARTE_397_460	99.4

Sequence based PCA Plot of the family - PF13948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=41 Length=17
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay