3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13947

Details:

PFam ID : PF13947

PFam Domain Description : Wall-associated receptor kinase galacturonan-binding

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 645

Average sequence length: 106.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13947	Q54455_SERMA_251_326	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13947	B3TJG2_CAPAN_24_134	100

Sequence based PCA Plot of the family - PF13947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=18
Motif2 Start=14 Length=8
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay