3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13942

Details:

PFam ID : PF13942

PFam Domain Description : YfhG lipoprotein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 52

Average sequence length: 173.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13942	B4EZW1_PROMH_46_226	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13942	B4EZW1_PROMH_46_226	100

Sequence based PCA Plot of the family - PF13942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=8
Motif2 Start=156 Length=11
Motif3 Start=97 Length=8
Motif4 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay