3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13941

Details:

PFam ID : PF13941

PFam Domain Description : MutL protein

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 103

Average sequence length: 440.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13941	E6CXX5_PROAC_3_178	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13941	D6TN33_9CHLR_21_505	100

Sequence based PCA Plot of the family - PF13941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=8
Motif2 Start=6 Length=17
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay