Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13940
Details:

PFam ID : PF13940

PFam Domain Description : Toxin Ldr, type I toxin-antitoxin system

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 14

Average sequence length: 32

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13940A2BJR0_HYPBU_14_102No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13940E9WRY0_ECOLX_10_39100
Sequence based PCA Plot of the family - PF13940 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay