3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13937

Details:

PFam ID : PF13937

PFam Domain Description : Domain of unknown function (DUF4212)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 243

Average sequence length: 79.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13937	B6BRQ3_9RICK_1_47	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13937	E7QWP5_9EURY_39_122	100

Sequence based PCA Plot of the family - PF13937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay