3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13936

Details:

PFam ID : PF13936

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 741

Average sequence length: 42.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13936	B7LND6_ESCF3_2_132	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13936	E4HMX1_PROAC_142_185	100

Sequence based PCA Plot of the family - PF13936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay