3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13935

Details:

PFam ID : PF13935

PFam Domain Description : Ead/Ea22-like protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 134

Average sequence length: 136.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13935	B7LND6_ESCF3_2_132	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13935	E9WHA3_ECOLX_2_160	96.9

Sequence based PCA Plot of the family - PF13935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay