3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13934

Details:

PFam ID : PF13934

PFam Domain Description : Nuclear pore complex assembly

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 96

Average sequence length: 230.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13934	E9G9Q6_DAPPU_1_91	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13934	B2VXI3_PYRTR_74_327	100

Sequence based PCA Plot of the family - PF13934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=171 Length=8
Motif2 Start=1 Length=8
Motif3 Start=223 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay