3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13932

Details:

PFam ID : PF13932

PFam Domain Description : GidA associated domain 3

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 1020

Average sequence length: 71.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13932	Q4UAG1_THEAN_665_738	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13932	Q4UAG1_THEAN_665_738	99.7

Sequence based PCA Plot of the family - PF13932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=24 Length=8
Motif3 Start=51 Length=17
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay