3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13931

Details:

PFam ID : PF13931

PFam Domain Description : Kinesin-associated microtubule-binding

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 66

Average sequence length: 85.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13931	A4RLJ3_MAGO7_942_978	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13931	B6Q7W1_PENMQ_994_1143	100

Sequence based PCA Plot of the family - PF13931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay