3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13930

Details:

PFam ID : PF13930

PFam Domain Description : DNA/RNA non-specific endonuclease

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 334

Average sequence length: 130.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13930	B8G9B2_CHLAD_1241_1356	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13930	Q21NY0_SACD2_315_455	100

Sequence based PCA Plot of the family - PF13930 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=113 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay