3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13928

Details:

PFam ID : PF13928

PFam Domain Description : Floricaula / Leafy protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 203

Average sequence length: 42.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13928	A3GGN6_PICST_236_260	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13928	A3GGN6_PICST_236_260	99.0

Sequence based PCA Plot of the family - PF13928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay