3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13927

Details:

PFam ID : PF13927

PFam Domain Description : Immunoglobulin domain

Number of Sequence in 50% Dataset : 432

Number of Sequence in Full Dataset : 1048

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13927	E2AFA0_9HYME_377_445	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13927	E1BBK2_BOVIN_124_197	97.1

Sequence based PCA Plot of the family - PF13927 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay