3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13925

Details:

PFam ID : PF13925

PFam Domain Description : con80 domain of Katanin

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 99

Average sequence length: 141.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13925	B4IRZ7_DROPE_1_55	32.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13925	D2VT51_NAEGR_440_607	100

Sequence based PCA Plot of the family - PF13925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay