3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13923

Details:

PFam ID : PF13923

PFam Domain Description : Zinc finger, C3HC4 type (RING finger)

Number of Sequence in 50% Dataset : 302

Number of Sequence in Full Dataset : 3071

Average sequence length: 48.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13923	A4Q379_MEDTR_30_97	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13923	D8U5L7_VOLCA_83_180	99.9

Sequence based PCA Plot of the family - PF13923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=8
Motif2 Start=19 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay