3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13921

Details:

PFam ID : PF13921

PFam Domain Description : Myb-like DNA-binding domain

Number of Sequence in 50% Dataset : 354

Number of Sequence in Full Dataset : 2092

Average sequence length: 61.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13921	D2VGY6_NAEGR_286_365	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13921	Q4E1M0_TRYCR_64_136	99.9

Sequence based PCA Plot of the family - PF13921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay