3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13920

Details:

PFam ID : PF13920

PFam Domain Description : Zinc finger, C3HC4 type (RING finger)

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 1687

Average sequence length: 48.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13920	D2VGY6_NAEGR_286_365	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13920	D2VGY6_NAEGR_286_365	98.5

Sequence based PCA Plot of the family - PF13920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay