3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13919

Details:

PFam ID : PF13919

PFam Domain Description : Transcriptional enhancer, Asx-hm domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 66

Average sequence length: 128.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13919	B4QFV0_DROSI_193_302	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13919	F0XFT5_9PEZI_63_195	100

Sequence based PCA Plot of the family - PF13919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay