3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13917

Details:

PFam ID : PF13917

PFam Domain Description : Zinc knuckle

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 150

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13917	C5KSI7_9ALVE_150_183	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13917	C1BQF5_9MAXI_82_112	100

Sequence based PCA Plot of the family - PF13917 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay