3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13913

Details:

PFam ID : PF13913

PFam Domain Description : zinc-finger of a C2HC-type

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 360

Average sequence length: 24.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13913	Q22W47_TETTH_1242_1262	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13913	C3Y249_BRAFL_427_445	93.8

Sequence based PCA Plot of the family - PF13913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay