3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13911

Details:

PFam ID : PF13911

PFam Domain Description : AhpC/TSA antioxidant enzyme

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 290

Average sequence length: 129.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13911	B1MEH3_MYCA9_50_160	69.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13911	A8NUG4_COPC7_574_728	100

Sequence based PCA Plot of the family - PF13911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=147 Length=8
Motif4 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay