3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13909

Details:

PFam ID : PF13909

PFam Domain Description : C2H2-type zinc-finger domain

Number of Sequence in 50% Dataset : 189

Number of Sequence in Full Dataset : 636

Average sequence length: 24.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13909	C3Z2S6_BRAFL_37_229	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13909	Q6GQ02_XENLA_72_96	73

Sequence based PCA Plot of the family - PF13909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay