3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13908

Details:

PFam ID : PF13908

PFam Domain Description : Wnt and FGF inhibitory regulator

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 122

Average sequence length: 148.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13908	C3Z2S6_BRAFL_37_229	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13908	F1R716_DANRE_12_186	99.1

Sequence based PCA Plot of the family - PF13908 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=18
Motif2 Start=34 Length=11
Motif3 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay