3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13907

Details:

PFam ID : PF13907

PFam Domain Description : Domain of unknown function (DUF4208)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 104

Average sequence length: 99.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13907	B6AJB1_CRYMR_1_73	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13907	E3QD41_COLGM_1467_1574	100

Sequence based PCA Plot of the family - PF13907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay