3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13906

Details:

PFam ID : PF13906

PFam Domain Description : C-terminus of AA_permease

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 254

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13906	C3XPQ8_BRAFL_561_611	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13906	C5LVE9_9ALVE_263_313	100

Sequence based PCA Plot of the family - PF13906 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=11
Motif2 Start=3 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay