3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13904

Details:

PFam ID : PF13904

PFam Domain Description : Domain of unknown function (DUF4207)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 66

Average sequence length: 239.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13904	A7RF40_NEMVE_7_298	63.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13904	B4MV42_DROWI_52_487	100

Sequence based PCA Plot of the family - PF13904 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=284 Length=8
Motif4 Start=257 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay