3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13899

Details:

PFam ID : PF13899

PFam Domain Description : Thioredoxin-like

Number of Sequence in 50% Dataset : 219

Number of Sequence in Full Dataset : 1092

Average sequence length: 86.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13899	B9FD85_ORYSJ_177_285	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13899	E8R4Q3_ISOPI_811_910	100

Sequence based PCA Plot of the family - PF13899 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=8
Motif3 Start=92 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay