3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13898

Details:

PFam ID : PF13898

PFam Domain Description : Domain of unknown function (DUF4205)

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 174

Average sequence length: 204.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13898	E1B776_BOVIN_423_476	73.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13898	F0XY11_9STRA_1_192	100

Sequence based PCA Plot of the family - PF13898 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=39 Length=18
Motif3 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay