3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13897 Details: PFam ID : PF13897 PFam Domain Description : Golgi-dynamics membrane-trafficking Number of Sequence in 50% Dataset : 16 Number of Sequence in Full Dataset : 80 Average sequence length: 89.3 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13897A0BU05_PARTE_428_49460 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13897A0BU05_PARTE_428_494100 Sequence based PCA Plot of the family - PF13897 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=1 Length=8Motif2 Start=32 Length=8Motif3 Start=81 Length=8Motif4 Start=108 Length=11 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF13897
PFam Domain Description : Golgi-dynamics membrane-trafficking
Number of Sequence in 50% Dataset : 16
Number of Sequence in Full Dataset : 80
Average sequence length: 89.3
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER