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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13897
Details:

PFam ID : PF13897

PFam Domain Description : Golgi-dynamics membrane-trafficking

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 80

Average sequence length: 89.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13897A0BU05_PARTE_428_49460
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF13897A0BU05_PARTE_428_494100
Sequence based PCA Plot of the family - PF13897 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=32 Length=8
Motif3 Start=81 Length=8
Motif4 Start=108 Length=11
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay