3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13896

Details:

PFam ID : PF13896

PFam Domain Description : Glycosyl-transferase for dystroglycan

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 280

Average sequence length: 208.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13896	D2V1U0_NAEGR_429_722	73.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13896	B7PXV0_IXOSC_99_284	100

Sequence based PCA Plot of the family - PF13896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=295 Length=8
Motif2 Start=149 Length=8
Motif3 Start=23 Length=8
Motif4 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay